Software Tools

Below you will find an overview of QIM developed software tools. The tools are free to use. Please respect the license restrictions mentioned with the code and remember to cite us appropriately. If you have any questions please contact us on info@qim.dk.

Software Tools
Segmentation GUI Deep Learning

InSegT3D

Interactive 3D segmentation tool providing real-time full image segmentation from minimal user input.
Read more GitHub
Analysis Morphometry

Local Thickness

Fast local thickness in 2D and 3D
Read more GitHub
Segmentation Topology Deep Learning

Same-Class Neighbor Penalization

SCNP is an optimization method for improving topology accuracy in image segmentation deep learning models.
Read more GitHub
Analysis Orientation

Structure Tensor

Analyses orientation in volumetric images using the gradient-based structure tensor method.
Read more GitHub