List of publications

2023

Johansson, S. and Engqvist, J. and Tryding, J. and Hall, S.A.

Experimental investigation of microscale mechanisms during compressive loading of paperboard

Cellulose

2023

Larsson, E. and Gürsoy, D. and Hall, S.A.

Kitchen-Based Light Tomography – a DIY toolkit for advancing tomography – by and for the tomography community

Tomography of Materials and Structures 1 : 100001

View Publication

2023

Lowes, M. and Christensen, J. and Hansen, B. and Hannemose, M. and Dahl, A. and Dahl, V.

Interactive Scribble Segmentation

Proceedings of the Northern Lights Deep Learning Workshop

View Publication

2023

Mikkelsen, L. and Fæster, S. and Dahl, V.

Dataset for scanning electron microscopy based local fiber volume fraction analysis of non-crimp fabric glass fiber reinforced composites

Composites Part A: Applied Science and Manufacturing : 107493

View Publication

2023

Ørting, S. N. and Stephensen, H. J. T. and Sporring, J.

Morphology on categorical distributions

Journal of Mathematical Imaging and Vision : 1-13

View Publication

2022

Auenhammer, R.M. and Jeppesen, N. and Mikkelsen, L.P. and Dahl, V.A. and Asp, L.E.

X-ray computed tomography data structure tensor orientation mapping for finite element models—STXAE

Software Impacts : 100216

View Publication

2022

Auenhammer, R.M. and Jeppesen, N. and Mikkelsen, L.P. and Dahl, V.A. and Blinzler, B.J. and Asp, L.E.

Robust numerical analysis of fibrous composites from X-ray computed tomography image data enabling low resolutions

Composites Science and Technology : 109458

View Publication

2022

Christensen, J. and Jensen, P. and Hannemose, M. and Dahl, A. and Dahl, V.

LayeredCNN: Segmenting Layers with Autoregressive Models

Proceedings of the Northern Lights Deep Learning Workshop 3

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2022

Jensen, P.M. and Jeppesen, N. and Dahl, A.B. and Dahl, V.A.

Review of Serial and Parallel Min-Cut/Max-Flow Algorithms for Computer Vision

IEEE Transactions on Pattern Analysis & Machine Intelligence : 1-1

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2022

Jensen, J. and Schou, M. and Andersen, S. and Tomov, B. and Søgaard, S. and Sørensen, C. and Nielsen, M. and Gundlach, C. and Kjer, H. and Dahl, A. and others

In Vivo Super Resolution Ultrasound Imaging using the Erythrocytes-SURE

2022 IEEE International Ultrasonics Symposium (IUS) : 1–4

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2022

Jensen, J. and Schou, M. and Andersen, S. and Søgaard, S. and Sørensen, C. and Nielsen, M. and Gundlach, C. and Kjer, H. and Dahl, A. and Stuart, M. and others

Fast super resolution ultrasound imaging using the erythrocytes

Medical Imaging 2022: Ultrasonic Imaging and Tomography : 79–84

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2022

Jensen, P. and Wickramasinghe, U. and Dahl, A. and Fua, P. and Dahl, V.

Deep Active Latent Surfaces for Medical Geometries

arXiv preprint arXiv:2206.10241

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2022

Johansson, S. and Engqvist, J. and Tryding, J. and Hall, S.A.

Microscale deformation mechanisms in paperboard during continuous tensile loading and 4D synchrotron X‐ray tomography

Strain : e12414

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2022

Kalbfleisch S. and Zhang Y. and Kahnt M. and Buakor K. and Langer M. and Dreier T. and Dierks H. and Stjärneblad P. and Larsson E. and Gordeyeva K. and Chayanun L. and Söderberg D. and Wallentin J. and Bech M. and Villanueva-Perez P.

X-ray in-line holography and holotomography at the NanoMAX beamline

J. Synchrotron Radiation 29 : 224-229

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2022

Martell, J. and Alwmark, C. and Daly, L. and Hall, S. and Alwmark, S. and Woracek, R. and Hektor, J. and Helfen, L. and Tengattini, A. and Lee, M.

The scale of a martian hydrothermal system explored using combined neutron and x-ray tomography

Science Advances 8(19) : eabn3044

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2022

Perens, J. and Salinas, C. and Roostalu, U. and Skytte, J. and Gundlach, C. and Hecksher-Sørensen, J. and Dahl, A. and Dyrby, T.

Multimodal 3D mouse brain atlas framework with skull-derived coordinate system

Neuroinformatics : 18 p

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2022

Pingel, J. and Kjer, H. and Biering-Sørensen, F. and Feidenhans'l, R. and Dyrby, T.

3D synchrotron imaging of muscle tissues at different atrophic stages in stroke and spinal cord injury: a proof-of-concept study

Scientific Reports 12(1) : 17289

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2022

Sporring, J. and Darkner, S.

Reconstructing Binary Signals from Local Histograms

Entropy 24(3) : 433

View Publication

2022

Sporring, J. and Darkner, S.

An algebra for local histograms

Frontiers in Computer Science 4

View Publication

2022

Tichit, P. and Zhou, T. and Kjer, H.M. and Dahl, V.A. and Dahl, A.B. and Baird, E.

InSegtCone: interactive segmentation of crystalline cones in compound eyes

BMC zoology 7(1) : 1-12

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2022

Törnquist, E. and Le Cann, S. and Tengattini, A. and Helfen, L. and Kok, J. and Hall, S.A. and Isaksson, H.

The hydration state of bone tissue affects contrast in neutron tomographic images

Frontiers in Bioengineering and Biotechnology 10 : 911866

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2022

Wang, C. and Ostergaard, L. and Hasselholt, S. and Sporring, J.

Extracting Mitochondrial Cristae Characteristics from 3D Focused Ion Beam Scanning Electron Microscopy Data

bioRxiv : 2022-11

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2022

Wu, D. and Engqvist, J. and Barbier, C. and Karlsson, C. and Hall, S.

Unravelling the deformation process of a compacted paper: in-situ tensile loading, 4D X-ray tomography and image-based analysis

International Journal of Solids and Structures 242 : 111539

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2021

Andersen, S.B. and Taghavi, I. and Kjer, H.M. and Søgaard, S.B. and Gundlach, C. and Dahl, V.A. and Nielsen, M.B. and Dahl, A.B. and Jensen, J.A. and Sørensen, C.M.

Evaluation of 2D super-resolution ultrasound imaging of the rat renal vasculature using ex vivo micro-computed tomography

Scientific reports 11(1) : 1-13

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2021

Baud, P. and Hall, S. and Heap, M.J. and Ji, Y. and Wong, T.F.

The Brittle‐Ductile Transition in Porous Limestone: Failure Mode, Constitutive Modeling of Inelastic Deformation and Strain Localization

Journal of Geophysical Research: Solid Earth 126(5) : e2020JB021602

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2021

Brenne, E.O. and Dahl, V.A. and Jørgensen, P.S.

A physical model for microstructural characterization and segmentation of 3D tomography data

Materials Characterization 171 : 110796

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2021

Heingård, M. and Musser, G. and Hall, S.A. and Clarke, J.A.

New remains of scandiavis Mikkelseni inform avian phylogenetic relationships and brain evolution

Diversity 13(12) : 651

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2021

Jeppesen, N. and Jensen, P.M. and Christensen, A.N. and Dahl, A.B. and Dahl, V.A.

Faster Multi-Object Segmentation using Parallel Quadratic Pseudo-Boolean Optimization

Proceedings of the IEEE/CVF International Conference on Computer Vision : 6260-6269

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2021

Jeppesen, N. and Mikkelsen, L.P. and Dahl, A.B. and Christensen, A.N. and Dahl, V.A.

Quantifying effects of manufacturing methods on fiber orientation in unidirectional composites using structure tensor analysis

Composites Part A: Applied Science and Manufacturing 149 : 106541

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2021

Johansson, S. and Engqvist, J. and Tryding, J. and Hall, S.A.

3D Strain Field Evolution and Failure Mechanisms in Anisotropic Paperboard

Experimental Mechanics 61(3) : 581-608

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2021

Koo, J. and Brenne, E.O. and Dahl, A.B. and Dahl, V.A.

A Tomographic Reconstruction Method using Coordinate-based Neural Network with Spatial Regularization

Proceedings of the Northern Lights Deep Learning Workshop 2

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2021

Koo, J. and Dahl, A.B. and Dahl, V.A.

DALM, Deformable Attenuation-Labeled Mesh for Tomographic Reconstruction and Segmentation

IEEE Transactions on Computational Imaging 7 : 151-163

View Publication

2021

Koo, J. and Dahl, A.B. and Bærentzen, J.A. and Chen, Q. and Bals, S. and Dahl, V.A.

Shape from projections via differentiable forward projector for computed tomography

Ultramicroscopy 224 : 113239

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2021

Laprade, W.M. and Perslev, M. and Sporring, J.

How few annotations are needed for segmentation using a multi-planar U-Net?

Deep Generative Models, and Data Augmentation, Labelling, and Imperfections : 209-216

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2021

Perens, J. and Salinas, C.G. and Skytte, J.L. and Roostalu, U. and Dahl, A.B. and Dyrby, T.B. and Wichern, F. and Barkholt, P. and Vrang, N. and Jelsing, J. and Hecksher-Sørensen, J.

An optimized mouse brain atlas for automated mapping and quantification of neuronal activity using iDISCO+ and light sheet fluorescence microscopy

Neuroinformatics 19(3) : 433-446

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2021

Perens, J. and Skytte, J.L. and Salinas, C.G. and Hecksher-Sorensen, J. and Dyrby, T.B. and Dahl, A.B.

Comparative Study Of Voxel-Based Statistical Analysis Methods For Fluorescently Labelled And Light Sheet Imaged Whole-Brain Samples

2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI) : 1433-1437

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2021

Peter Winkel Rasmussen and Anders Bjorholm Dahl and Henning Osholm Sørensen and Anders Nymark Christensen

Dynamic X-ray 3D imaging of fluid flow in Stevns Klint chalk

DHRTC Technology Conference 2021: Oil and Gas R&D towards 2050–supporting the energy transition

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2021

Rasmussen, P.W. and Sørensen, H.O. and Bruns, S. and Dahl, A.B. and Christensen, A.N.

Improved dynamic imaging of multiphase flow by constrained tomographic reconstruction

Scientific reports 11(1) : 1-14

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2021

Reichardt, M. and Jensen, P.M. and Dahl, V.A. and Dahl, A.B. and Ackermann, M. and Shah, H. and Länger, F. and Werlein, C. and Kuehnel, M.P. and Jonigk, D. and Salditt, T.

3D virtual histopathology of cardiac tissue from Covid-19 patients based on phase-contrast X-ray tomography

Elife 10 : e71359

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2021

Stenqvist, T. and Hektor, J. and Bylund, S. and Moberg, R. and Edwards, M.O. and Hall, S.A. and Näslund, L.Å.

3D X‐Ray Diffraction Characterization of Grain Growth and Recrystallization in Rolled Braze Clad Aluminum Sheet

Advanced Engineering Materials 23(11) : 2100126

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2021

Stephensen, H.J. and Svane, A.M. and Villanueva, C.B. and Goldman, S.A. and Sporring, J.

Measuring shape relations using r-parallel sets

Journal of Mathematical Imaging and Vision 63(8) : 1069-1083

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2021

Sørensen, H.O. and Rasmussen, P.W. and Dahl, A.B. and Christensen, A.

Tri-axial flow cell for dynamic CT

DHRTC Technology Conference 2021: Oil and Gas R&D towards 2050–supporting the energy transition

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2021

Townsend, P. and Larsson, E. and Karlson, T. and Hall, S.A. and Lundman, M. and Bergström, P. and Hanson, C. and Lorén, N. and Gebäck, T. and Särkkä, A. and Röding, M.

Stochastic modelling of 3D fiber structures imaged with X-ray microtomography

Computational Materials Science 194 : 110433

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2021

Törnquist, E. and Le Cann, S. and Tudisco, E. and Tengattini, A. and Andò, E. and Lenoir, N. and Hektor, J. and Raina, D.B. and Tägil, M. and Hall, S.A. and Isaksson, H.

Dual modality neutron and x-ray tomography for enhanced image analysis of the bone-metal interface

Physics in Medicine & Biology 66(13) : 135016

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2021

Wang, Y. and Emerson, M.J. and Conradsen, K. and Dahl, A.B. and Dahl, V.A. and Maire, E. and Withers, P.J.

Evolution of fibre deflection leading to kink-band formation in unidirectional glass fibre/epoxy composite under axial compression

Composites Science and Technology 213 : 108929

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2020

Andersson, M. and Kjer, H.M. and Rafael-Patino, J. and Pacureanu, A. and Pakkenberg, B. and Thiran, J.P. and Ptito, M. and Bech, M. and Dahl, A.B. and Dahl, V.A. and Dyrby, T.B.

Axon morphology is modulated by the local environment and impacts the noninvasive investigation of its structure–function relationship

Proceedings of the National Academy of Sciences 117(52) : 33649-33659

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2020

Cattaneo, C. and Liu, J. and Wang, C. and Pagliarini, E. and Sporring, J. and Bredie, W.L.

Comparison of manual and machine learning image processing approaches to determine fungiform papillae on the tongue

Scientific Reports 10(1) : 1-15

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2020

Dahl, V.A. and Emerson, M.J. and Trinderup, C.H. and Dahl, A.B.

Content-based propagation of user markings for interactive segmentation of patterned images

Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops : 994-995

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2020

Dahlin, L.B. and Rix, K.R. and Dahl, V.A. and Dahl, A.B. and Jensen, J.N. and Cloetens, P. and Pacureanu, A. and Mohseni, S. and Thomsen, N.O. and Bech, M.

Three-dimensional architecture of human diabetic peripheral nerves revealed by X-ray phase contrast holographic nanotomography

Scientific reports 10(1) : 1-8

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2020

Jensen, P.M. and Dahl, A.B. and Dahl, V.A.

Multi-object Graph-based Segmentation with Non-overlapping Surfaces

Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops : 976-977

View Publication

2020

Jeppesen, N. and Christensen, A.N. and Dahl, V.A. and Dahl, A.B.

Sparse layered graphs for multi-object segmentation

Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition : 12777-12785

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2020

Jeppesen, N. and Dahl, V.A. and Christensen, A.N. and Dahl, A.B. and Mikkelsen, L.P.

Characterization of the fiber orientations in non-crimp glass fiber reinforced composites using structure tensor

IOP Conference Series: Materials Science and Engineering 942(1) : 012037

View Publication

2020

Kjer, H.M. and Andersson, M. and He, Y. and Elkjaer, M.L. and Pacureanu, A. and Illes, Z. and Pakkenberg, B. and Dahl, A.B. and Dahl, V.A. and Dyrby, T.B.

Streamline tractography for 3D mapping of axon bundle organization in one MRI voxel using ultra-high resolution synchrotron radiation imaging

2020 ISMRM & SMRT Virtual Conference & Exhibition : 1-3

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2019

Lindhøj, M.B. and Henriksen, T. and Pedersen, L. and Sporring, J.

Using a high-level parallel programming language for GPU-accelerated tomographic reconstruction

2019 International Conference on High Performance Computing & Simulation (HPCS) : 27-32

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2020

Andersson, M. and Rafael-Patino, J. and Kjer, H.M. and Dahl, V.A. and Pacureanu, A. and Bech, M. and Dahl, A.B. and Thiran, J.P. and Dyrby, T.B.

The impact of axon orientation dispersion and 3D diameter variations on the transverse apparent diffusion coefficient

2020 ISMRM & SMRT Virtual Conference & Exhibition : 1-3

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2020

Nyboe Ørting, S. and Teglbjærg Stephensen, H.J. and Sporring, J.

Morphology on categorical distributions

arXiv e-prints : arXiv-2012

View Publication

2020

Wang, C. and Cattaneo, C. and Liu, J. and Bredie, W. and Pagliarini, E. and Sporring, J.

A Novel Approach to Tongue Standardization and Feature Extraction

International Conference on Medical Image Computing and Computer-Assisted Intervention : 36-45

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2020

Ørting, S.N. and Stephensen, H.J.T. and Sporring, J.

Morphology on categorical distributions

arXiv preprint arXiv:2012.07315

View Publication

2019

Borg, L. and Sporring, J. and Dam, E.B. and Dahl, V.A. and Dyrby, T.B. and Feidenhans, R. and Dahl, A.B. and Pingel, J.

Muscle fibre morphology and microarchitecture in cerebral palsy patients obtained by 3D synchrotron X-ray computed tomography

Computers in Biology and Medicine 107 : 265-269

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2019

Dahl, V.A. and Dahl, A.B.

Global Similarity with Additive Smoothness for Spectral Segmentation

International Conference on Scale Space and Variational Methods in Computer Vision : 357-368

View Publication

2019

Emerson, M.J. and Dahl, A.B. and Conradsen, K. and Dahl, V.A.

Insegt fibre: A user-friendly software for individual fibre segmentation

22nd International Conference On Composite Materials (ICCM22)

View Publication

2019

Emerson, M.J. and Jespersen, K.M. and Wang, Y. and Withers, P.J. and Dahl, V.A. and Conradsen, K. and Mikkelsen, L.P. and Dahl, A.B.

INSEGT FIBRE: A POWERFUL SEGMENTATION TOOL FOR QUANTIFYING FIBRE ARCHITECTURE IN COMPOSITES

Int. Conf. Tomography of Materials & Structures

View Publication

2019

Hempel, C. and Sporring, J. and Kurtzhals, J.A.L.

Experimental cerebral malaria is associated with profound loss of both glycan and protein components of the endothelial glycocalyx

The FASEB Journal 33(2) : 2058-2071

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2019

Jensen, P.M. and Trinderup, C.H. and Dahl, A.B. and Dahl, V.A.

Zonohedral approximation of spherical structuring element for volumetric morphology

Scandinavian Conference on Image Analysis : 128-139

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2019

Nguyen, T.T. and Dahl, V.A. and Bærentzen, J.A. and Dahl, A.B.

Deformable Mesh Evolved by Similarity of Image Patches

2019 IEEE International Conference on Image Processing (ICIP) : 2731-2735

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2019

Saxena, P. and Bissacco, G. and Gundlach, C. and Dahl, V.A. and Trinderup, C.H. and Dahl, A.B.

Process characterization for molding of paper bottles using computed tomography and structure tensor analysis

9th Conference on industrial computed tomography

View Publication

2018

Dahl, V.A. and Dahl, A.B. and Trinderup, C.H. and Gundlach, C.

Layered Surface Detection for Virtual Unrolling

2018 24th International Conference on Pattern Recognition (ICPR) : 3074-3080

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2018

Dahl, V.A. and Koo, J. and Hansen, P.C. and Dahl, A.B.

Deformable Curves for Outlining Objects Directly From Projections

69th Annual Conference of the Nordic Microscopy Society

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2018

Emerson, M.J. and Dahl, A.B. and Dahl, V.A. and Conradsen, K. and Wang, Y. and Withers, P.J. and Jespersen, K.M. and Mikkelsen, L.P.

Understanding UD Fibre-reinforced Polymers through X-ray Imaging and Individual Fibre Tracking

69th Annual Conference of the Nordic Microscopy Society

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2018

Emerson, M.J. and Dahl, V.A. and Conradsen, K. and Mikkelsen, L.P. and Dahl, A.B.

A multimodal data-set of a unidirectional glass fibre reinforced polymer composite

Data in brief 18 : 1388-1393

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2018

Emerson, M.J. and Dahl, V.A. and Conradsen, K. and Mikkelsen, L.P. and Dahl, A.B.

Statistical validation of individual fibre segmentation from tomograms and microscopy

Composites Science and Technology 160 : 208-215

View Publication

2018

Emerson, M.J. and Wang, Y. and Withers, P.J. and Conradsen, K. and Dahl, A.B. and Dahl, V.A.

Quantifying fibre reorientation during axial compression of a composite through time-lapse X-ray imaging and individual fibre tracking

Composites Science and Technology 168 : 47-54

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2018

Fedrigo, A. and Marstal, K. and Bender Koch, C. and Andersen Dahl, V. and Bjorholm Dahl, A. and Lyksborg, M. and Gundlach, C. and Ott, F. and Strobl, M.

Investigation of a Monturaqui Impactite by means of bi-modal X-ray and neutron tomography

Journal of Imaging 4(5) : 72

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2018

Kehl, C. and Mustafa, W. and Kehres, J. and Dahl, A.B. and Olsen, U.L.

Multi-Spectral Imaging via Computed Tomography (MUSIC)-Comparing Unsupervised Spectral Segmentations for Material Differentiation

arXiv preprint arXiv:1810.11823

View Publication

2018

Sales, M. and Strobl, M. and Shinohara, T. and Tremsin, A. and Kuhn, L.T. and Lionheart, W.R. and Desai, N.M. and Dahl, A.B. and Schmidt, S.

Three dimensional polarimetric neutron tomography of magnetic fields

Scientific reports 8(1) : 1-6

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2018

Sporring, J.

Estimating the Continuous Entropy of a Discrete Set of Orientations in R↑ 3

View Publication

2017

Borg, L. and Jørgensen, J.S. and Frikel, J. and Sporring, J.

Reduction of variable-truncation artifacts from beam occlusion during in situ x-ray tomography

Measurement Science and Technology 28(12) : 124004

View Publication

2017

Borg, L. and Jørgensen, J.S. and Frikel, J. and Quinto, E.T. and Sporring, J.

Reducing artifacts from varying projection truncations

3rd International Conference on Tomography of 3D Materials and Structures

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2017

Borg, L. and Sporring, J. and Jørgensen, J.S.

Towards characterizing and reducing artifacts caused by varying projection truncation

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2017

Dahl, V.A. and Dahl, A.B.

A probabilistic framework for curve evolution

International Conference on Scale Space and Variational Methods in Computer Vision : 421-432

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2017

Dahl, V.A. and Dahl, A.B. and Hansen, P.C.

Computing segmentations directly from x-ray projection data via parametric deformable curves

Measurement Science and Technology 29(1) : 014003

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2017

Einarsson, G. and Jensen, J.N. and Paulsen, R.R. and Einarsdottir, H. and Ersbøll, B.K. and Dahl, A.B. and Christensen, L.B.

Foreign object detection in multispectral x-ray images of food items using sparse discriminant analysis

Scandinavian Conference on Image Analysis : 350-361

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2017

Emerson, M.J. and Dahl, A.B. and Dahl, V.A. and Conradsen, K. and Mikkelsen, L.P.

New approach for validating the segmentation of 3D data applied to individual fibre extraction

3rd International Conference on Tomography of 3D Materials and Structures

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2017

Emerson, M.J. and Dahl, V.A. and Mikkelsen, L.P. and Dahl, A.B. and Conradsen, K.

Geometrical Characterisation of Individual Fibres From X-Ray Tomograms

30th Nordic Seminar on Computational Mechanics (NSCM-30) : 59

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2018

Emerson, M.J. and Jespersen, K.M. and Dahl, A.B. and Conradsen, K. and Mikkelsen, L.P.

Individual fibre segmentation from 3D X-ray computed tomography for characterising the fibre orientation in unidirectional composite materials

Composites Part A: Applied Science and Manufacturing 97 : 83-92

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2017

Emerson, M.J. and Wang, Y. and Jespersen, K.M. and Mikkelsen, L.P. and Withers, P.J. and Conradsen, K. and Dahl, V.A. and Dahl, A.B.

Unidirectional Fibre Composite Characterisation from X-ray Tomography

TMS 2017: 146th Annual Meeting and Exhibition

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2017

Kheirabadi, M. and Mustafa, W. and Lyksborg, M. and Olsen, U.L. and Dahl, A.B.

Multispectral x-ray CT: multivariate statistical analysis for efficient reconstruction

Developments in X-Ray Tomography XI 10391 : 1039113

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2017

Mukherjee, K. and Fæster, S. and Hansen, N. and Dahl, A.B. and Gundlach, C. and Frandsen, J.O. and Sturlason, A.

Graphite nodules in fatigue-tested cast iron characterized in 2D and 3D

Materials Characterization 129 : 169-178

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2017

Neldam, C.A. and Sporring, J. and Rack, A. and Lauridsen, T. and Hauge, E.M. and Jørgensen, H.L. and Jørgensen, N.R. and Feidenhansl, R. and Pinholt, E.M.

Synchrotron radiation μCT and histology evaluation of bone-to-implant contact

Journal of Cranio-Maxillofacial Surgery 45(9) : 1448-1457

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2017

Sun, J. and Zhang, Y.B. and Dahl, A.B. and Conradsen, K. and JUUL JENSEN, D.

A method to characterize the roughness of 2‐D line features: recrystallization boundaries

Journal of Microscopy 265(3) : 313-321

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